Uage
CLI
This section includes examples of how to use DNAflexpy both as a command-line tool and as a library in Python.
Once DNAflexpy is installed, you can run it from the command line:
| DNAflexpy "<path/to/nt/fasta/file>" \
--window-size 10 \
--feature "<DNaseI>/<NPP>" \
--outfile "<path/to/output.tsv>"
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Run by importing as library
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12 | from DNAflexpy.core import DNAflexpy
# Example usage
df = DNAflexpy(
input_file="input.fasta",
window_size=10,
feature="DNaseI",
threads=4
)
# Display the results
print(df.head())
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